CABS-dock: FcGR1-4

Project name: FcGR1-4

Status: done

submitted: 2026-07-09 02:26:58, status changed: 2026-07-09 07:29:12

Project settings

Protein sequence(s)	KAVIKLQPPWVSSVFQEESVTLHCEVPGSSSTQWFLNGTAIQTSTPTYHITSASEDDSGEYRCQRGLSGRSDPIQLEVHRGWLLLQVSSRVLTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNMSHSGTYHCSGMMGKHRYTSAGISVTVKELFPAPVLTASVTSPLLEGTPVTLSCETKLLLQRPGLQLYFSFYMMGSKTLRGRDTSSEYQILTARRREDSGLYWCEAATEDGNVLKRSPELELQVLG input pdb
Peptide sequence	YQQDDFLTYLDWALEE
Simulation mc cycles	50
Peptide secondary structure psipred	CCHHHHHHHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	26.1541	5.23819	17.8411	137
cluster_2.pdb ( medoid)	24.377	9.06591	31.9717	221
cluster_3.pdb ( medoid)	18.827	5.31151	10.652	100
cluster_4.pdb ( medoid)	18.7872	7.18575	22.056	135
cluster_5.pdb ( medoid)	11.9693	4.01025	9.8161	48
cluster_6.pdb ( medoid)	11.9361	4.85919	15.9273	58
cluster_7.pdb ( medoid)	10.9951	4.91126	26.1129	54
cluster_8.pdb ( medoid)	10.8504	7.18871	23.6838	78
cluster_9.pdb ( medoid)	6.18736	16.8085	37.8962	104
cluster_10.pdb ( medoid)	4.20155	15.4705	31.0456	65