CABS-dock: b17e8e093d108a0

Project name: b17e8e093d108a0

Status: done

submitted: 2025-07-02 06:08:18, status changed: 2025-07-02 09:30:29

Project settings

Protein sequence(s)	TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT input pdb
Peptide sequence	TFQAFDLSPFPS
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	22.3086	7.1273	30.7904	159
cluster_2.pdb ( medoid)	15.843	8.83671	27.3875	140
cluster_3.pdb ( medoid)	15.5402	8.49408	22.5388	132
cluster_4.pdb ( medoid)	15.1002	9.40387	24.2332	142
cluster_5.pdb ( medoid)	14.3217	6.49366	22.334	93
cluster_6.pdb ( medoid)	8.24324	9.21968	19.6629	76
cluster_7.pdb ( medoid)	7.4662	11.1168	36.7588	83
cluster_8.pdb ( medoid)	6.74056	9.3464	19.906	63
cluster_9.pdb ( medoid)	5.1947	14.0528	30.6019	73
cluster_10.pdb ( medoid)	3.27312	11.9152	23.2764	39