CABS-dock: Docking project

Project name: Docking project

Status: done

submitted: 2026-04-01 15:37:36, status changed: 2026-04-01 17:44:47

Project settings

Protein sequence(s)	SPRVVVRIVKSESGYGFNVRGQQVSSEGGQLRSINGELYAPLQHVSAVLPGGAADRRAGVRKGDRILEVNGVNVEEGATHKQVVDLIRAGEEKELILTVLLSVEEWETVM input pdb
Peptide sequence	SFGDGFADF
Simulation mc cycles	50
Peptide secondary structure	CCCCHHHHC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	32.018	4.6224	16.2056	148
cluster_2.pdb ( medoid)	18.3073	6.93711	19.2479	127
cluster_3.pdb ( medoid)	15.8837	7.80674	33.3075	124
cluster_4.pdb ( medoid)	14.5432	12.1019	47.8212	176
cluster_5.pdb ( medoid)	11.0826	7.2185	31.6391	80
cluster_6.pdb ( medoid)	8.95041	11.9548	40.3482	107
cluster_7.pdb ( medoid)	6.98896	10.8743	38.8839	76
cluster_8.pdb ( medoid)	5.65192	10.0851	24.4321	57
cluster_9.pdb ( medoid)	5.45813	9.89349	29.171	54
cluster_10.pdb ( medoid)	4.5576	11.1901	32.0259	51