CABS-dock: b319ddb59fd8648

Project name: b319ddb59fd8648

Status: done

submitted: 2026-01-19 17:33:12, status changed: 2026-01-19 20:11:04

Project settings

Protein sequence(s)	MVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGATMVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGAT input pdb
Peptide sequence	RVIFVQVGSNCR
Simulation mc cycles	50
Peptide secondary structure psipred	CEEEEEECCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	31.8225	3.80235	20.884	121
cluster_2.pdb ( medoid)	18.3541	5.50285	19.2095	101
cluster_3.pdb ( medoid)	17.2801	9.20136	26.9835	159
cluster_4.pdb ( medoid)	16.5098	6.90498	22.8025	114
cluster_5.pdb ( medoid)	16.3081	8.40073	18.0871	137
cluster_6.pdb ( medoid)	10.3773	7.13098	15.2923	74
cluster_7.pdb ( medoid)	8.96532	11.3772	25.3473	102
cluster_8.pdb ( medoid)	8.37812	7.99702	18.2435	67
cluster_9.pdb ( medoid)	8.1543	5.39593	17.984	44
cluster_10.pdb ( medoid)	6.89875	11.7413	26.0307	81