CABS-dock: b351129b8bf2ef5

Project name: b351129b8bf2ef5

Status: done

submitted: 2026-01-16 17:23:48, status changed: 2026-01-17 06:49:59

Project settings

Protein sequence(s)	AQFTTPNTTSPPPPTTSPTTSPPTNTTSPPTNTTTPTNTITKAANITKPGCPKQCGNLTVPYPFGIGLGSGCAIDPNFEINCVTNATGSQTPFIWNIQVYDISDAEMRISNTLNRRCYSSTGVLLQDDPAWMNLGRSSPYSFSSLNRFNVIGCDDGGIINGRNFANGCPALCSSSSEVVEGKCLGFGCCQISIPKGLKYFNTSMISSKNHSGAWSFNPCGYAFLGEATRFQFRGVQDLTDVNFVEKVMDNVPIVVDWAIGNLSCIEAQKRNDYACLENSRCVDSDTGLGGYRCNCNSGYEGNPYIGSGCQDIDECADPNANSCENICINTPGSYNCSCPEGYTGDGKKNGRGCIAPSSNSEFPWIKFSVGKFPSN input pdb
Peptide sequence	TIDNVHAQNVGEDLITVKGEGGAAV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCEEEECCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	80.053	1.24917	3.51136	100
cluster_2.pdb ( medoid)	19.3889	2.42407	7.27435	47
cluster_3.pdb ( medoid)	16.8425	3.68117	12.1601	62
cluster_4.pdb ( medoid)	16.0221	4.61861	14.4368	74
cluster_5.pdb ( medoid)	9.61407	5.72078	14.699	55
cluster_6.pdb ( medoid)	7.82656	8.81614	25.991	69
cluster_7.pdb ( medoid)	6.94886	3.59771	7.61979	25
cluster_8.pdb ( medoid)	3.32114	9.03304	21.0608	30
cluster_9.pdb ( medoid)	2.59573	6.93447	11.1379	18
cluster_10.pdb ( medoid)	2.28263	8.76181	13.874	20