CABS-dock: b3cfd95648995a2

Project name: b3cfd95648995a2

Status: done

submitted: 2026-01-14 13:54:21, status changed: 2026-01-15 01:54:58

Project settings

Protein sequence(s)	QIIPSNTTSPPTNSTSPPTNATAPAPSPTNTITKAANITKPGCPKQCGNVTVPYPFGIGSGCALDPMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPNSNSEFPWIK input pdb
Peptide sequence	IDNFKADDFGTMVRTNGGKQFDDMSIELNG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCHHHCCCEEECCCCCEECCEEEEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	80.9275	1.24803	13.3504	101
cluster_2.pdb ( medoid)	46.3449	2.17931	15.5545	101
cluster_3.pdb ( medoid)	28.3251	3.60104	20.4984	102
cluster_4.pdb ( medoid)	17.218	6.09827	13.9376	105
cluster_5.pdb ( medoid)	12.1052	6.52614	14.6878	79
cluster_6.pdb ( medoid)	7.80846	7.9401	19.7239	62
cluster_7.pdb ( medoid)	5.48543	12.2142	25.3596	67
cluster_8.pdb ( medoid)	4.15658	11.3074	23.4825	47
cluster_9.pdb ( medoid)	3.0389	8.22666	14.4358	25
cluster_10.pdb ( medoid)	2.31652	4.7485	14.5767	11