Project name: 3_SRC_RUTU

Status: done

submitted: 2023-11-27 16:03:23, status changed: 2023-11-28 02:50:21

Project settings
Protein sequence(s) TFVALYDYESRTETDLSFKKGERLQIVNNTEEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAKDAWEIPRESLRLEVKLGQGCCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQP input pdb
Peptide sequence FDGLDLAWL
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCC
Contact information
273:A 295:A 340:A 341:A 404:A
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 32.2726 1.82818 11.4197 59
cluster_2.pdb ( medoid) 28.8835 8.03227 44.809 232
cluster_3.pdb ( medoid) 28.8733 6.13024 22.3589 177
cluster_4.pdb ( medoid) 20.6278 4.99327 24.7691 103
cluster_5.pdb ( medoid) 12.3475 8.26076 30.2581 102
cluster_6.pdb ( medoid) 9.07567 10.4675 34.1039 95
cluster_7.pdb ( medoid) 8.69284 10.1233 35.0222 88
cluster_8.pdb ( medoid) 8.52305 10.5596 33.2234 90
cluster_9.pdb ( medoid) 3.28552 10.3484 23.2601 34
cluster_10.pdb ( medoid) 2.41355 8.28654 14.379 20