CABS-dock: b417e8dfc3cddbd

Project name: b417e8dfc3cddbd

Status: done

submitted: 2025-12-22 09:03:20, status changed: 2025-12-22 11:22:47

Project settings

Protein sequence(s)	MVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGATMVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGAT input pdb
Peptide sequence	RVISNFVQCGSNCR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	33.3553	5.21655	20.4839	174
cluster_2.pdb ( medoid)	27.1168	3.98277	13.9013	108
cluster_3.pdb ( medoid)	19.9365	5.21657	17.064	104
cluster_4.pdb ( medoid)	18.3903	8.1021	19.202	149
cluster_5.pdb ( medoid)	14.0371	5.9129	20.5745	83
cluster_6.pdb ( medoid)	11.7245	6.738	24.8995	79
cluster_7.pdb ( medoid)	11.6904	12.2322	27.8358	143
cluster_8.pdb ( medoid)	8.3763	6.80491	17.0495	57
cluster_9.pdb ( medoid)	7.26732	7.43052	18.2749	54
cluster_10.pdb ( medoid)	6.1128	8.01596	17.4162	49