CABS-dock: b483c4decf82e1c

Project name: b483c4decf82e1c

Status: done

submitted: 2026-02-27 01:28:44, status changed: 2026-02-27 06:35:02

Project settings

Protein sequence(s)	NIVLTQSPVSLAVSLGQRATISCRASKSVSTSGYSYMHWYQQKPGQPPRLLLYLGSNLESGVPARFSGSGSGTDFTLNIPVEEEDAATYYCQHIRELTRSFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN input pdb
Peptide sequence	CQLINTNGSWHIC
Simulation mc cycles	50
Peptide secondary structure psipred	CCEECCCCCEEEC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	21.9447	7.74673	20.7367	170
cluster_2.pdb ( medoid)	18.8121	6.48518	30.6144	122
cluster_3.pdb ( medoid)	18.6512	4.12842	25.1458	77
cluster_4.pdb ( medoid)	17.7978	5.61867	19.8219	100
cluster_5.pdb ( medoid)	13.014	5.9167	15.7751	77
cluster_6.pdb ( medoid)	10.3122	9.01843	20.1385	93
cluster_7.pdb ( medoid)	9.62258	11.9511	28.084	115
cluster_8.pdb ( medoid)	7.78771	12.0703	31.9505	94
cluster_9.pdb ( medoid)	7.22763	14.2509	30.4011	103
cluster_10.pdb ( medoid)	3.65666	13.4002	26.4039	49