CABS-dock: 2evq

Project name: 2evq

Status: done

submitted: 2025-12-12 15:55:55, status changed: 2025-12-12 19:09:36

Project settings

Protein sequence(s)	SSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVHK input pdb
Peptide sequence	KTWNPATGKWTE
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	20.6183	4.21956	22.3133	87
cluster_2.pdb ( medoid)	18.9533	10.1829	26.741	193
cluster_3.pdb ( medoid)	17.4556	4.81222	21.2782	84
cluster_4.pdb ( medoid)	15.7228	7.75945	27.6718	122
cluster_5.pdb ( medoid)	12.1556	7.65082	37.2401	93
cluster_6.pdb ( medoid)	11.2813	9.21879	34.4854	104
cluster_7.pdb ( medoid)	9.10789	9.22277	27.5342	84
cluster_8.pdb ( medoid)	7.15186	14.4019	47.6522	103
cluster_9.pdb ( medoid)	5.20459	13.4497	29.8564	70
cluster_10.pdb ( medoid)	4.56436	13.1453	32.4845	60