CABS-dock: b4c4b53cfb16c9f

Project name: b4c4b53cfb16c9f

Status: done

submitted: 2026-01-12 17:35:46, status changed: 2026-01-13 06:40:10

Project settings

Protein sequence(s)	QIIPSNTTSPPTNSTSPPTNATAPAPSPTNTITKAANITKPGCPKQCGNVTVPYPFGIGSGCALDPMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPNSNSEFPWIK input pdb
Peptide sequence	EQAGKINVVKDTIKVGAGEVFDGHG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCEEEECEEEECCCCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	61.7347	1.63603	37.6833	101
cluster_2.pdb ( medoid)	20.3949	4.95221	13.6283	101
cluster_3.pdb ( medoid)	18.6834	5.40588	18.3431	101
cluster_4.pdb ( medoid)	8.01008	9.61288	23.3241	77
cluster_5.pdb ( medoid)	6.6561	9.61523	20.8547	64
cluster_6.pdb ( medoid)	5.72137	6.99133	16.068	40
cluster_7.pdb ( medoid)	5.69871	7.72105	14.0778	44
cluster_8.pdb ( medoid)	4.33796	6.22412	9.9003	27
cluster_9.pdb ( medoid)	2.75238	6.17646	9.892	17
cluster_10.pdb ( medoid)	1.68229	16.644	25.6316	28