CABS-dock: b4fc7b1a30a383b

Project name: b4fc7b1a30a383b

Status: done

submitted: 2025-12-22 09:06:11, status changed: 2025-12-22 15:56:46

Project settings

Protein sequence(s)	MHVAQPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPMHVAQPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPDS input pdb
Peptide sequence	AKWYRYSQLDTWVLTPTGWV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEECCCCEEEECCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	37.6871	2.70649	12.07	102
cluster_2.pdb ( medoid)	22.4764	5.16096	26.1052	116
cluster_3.pdb ( medoid)	21.5091	6.32291	32.2309	136
cluster_4.pdb ( medoid)	20.3381	9.93212	42.1061	202
cluster_5.pdb ( medoid)	17.614	6.47212	19.7044	114
cluster_6.pdb ( medoid)	13.5465	6.86524	22.5038	93
cluster_7.pdb ( medoid)	11.3543	9.51178	26.2393	108
cluster_8.pdb ( medoid)	4.80075	7.29053	16.2891	35
cluster_9.pdb ( medoid)	4.32274	13.6487	38.5794	59
cluster_10.pdb ( medoid)	2.51432	13.9203	32.5671	35