CABS-dock: b4fece57964906f

Project name: b4fece57964906f

Status: done

submitted: 2025-12-26 00:58:20, status changed: 2025-12-26 23:35:07

Project settings

Protein sequence(s)	EEPLVVKVEEGDNAVLQCLKGTSDGPTQQLTWSRESPLKPFLKLSLGLPGLGIHMRPLAIWLFIFNVSQQMGGFYLCQPGPPSEKAWQPGWTVNVEGSGELFRWNVSDLGGLGCGLKNRSSEGPSSPSGKLMSPKLYVWAKDRPEIWEGEPPCLPPRDSLNQSLSQDLTMAPGSTLWLSCGVPPDSVSRGPLSWTHVHPKGPKSLLSLELKDDRPARDMWVMETGLLLPRATAQDAGKYYCHRGNLTMSFHLEITARPVLWHWLLRTGGWKVSAVTLAYLIFCLCSLVGILHLQRALCIKYLLFVFNFVFWLAGGVILGVALWLRHDPQTTNLLYLELGDKPAPNTFYVGIYILIAVGAVMMFVGFLGCYGACLLGTFFTCLVILFACEVAAGIWGFVNDQIAKDVKQFYDQALQQAVVNNAKAVVKTFHETLDCCGSSTLTALTTSNLCPSGSNIISNLFKEDCHQKIDDLFSGKLYLIGIAAIVVAVIMIFEMILSMVL input pdb
Peptide sequence	CRASQDISKYLNW
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	89.6056	1.12716	26.3009	101
cluster_2.pdb ( medoid)	22.0869	5.25199	13.5989	116
cluster_3.pdb ( medoid)	22.0713	8.78969	36.3232	194
cluster_4.pdb ( medoid)	19.3096	5.28233	28.1339	102
cluster_5.pdb ( medoid)	15.126	5.2228	17.9815	79
cluster_6.pdb ( medoid)	13.3472	8.61607	29.7902	115
cluster_7.pdb ( medoid)	5.66379	10.4171	27.6489	59
cluster_8.pdb ( medoid)	4.70041	15.1051	34.3921	71
cluster_9.pdb ( medoid)	2.77266	15.8692	37.7561	44
cluster_10.pdb ( medoid)	1.19545	16.73	39.4472	20