CABS-dock: b59510231e5de3d

Project name: b59510231e5de3d

Status: done

submitted: 2025-12-29 11:01:29, status changed: 2025-12-29 14:42:18

Project settings

Protein sequence(s)	MVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPARRVIVFVQCGSNCRMVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPA input pdb
Peptide sequence	LPPTDESIKYTIYNSTGIQIGAYNYMEIGG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCEEEECCCCEEECCCCEECCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	19.9377	5.76796	31.4275	115
cluster_2.pdb ( medoid)	15.2994	9.15067	30.5772	140
cluster_3.pdb ( medoid)	13.3205	9.00868	36.4767	120
cluster_4.pdb ( medoid)	10.377	10.6004	30.3776	110
cluster_5.pdb ( medoid)	9.76554	12.3905	34.7516	121
cluster_6.pdb ( medoid)	9.21918	13.4502	31.996	124
cluster_7.pdb ( medoid)	9.02794	9.52598	33.7789	86
cluster_8.pdb ( medoid)	8.71747	9.97996	29.8542	87
cluster_9.pdb ( medoid)	5.06577	12.4364	27.1376	63
cluster_10.pdb ( medoid)	3.16127	10.7552	26.2969	34