CABS-dock: NM23A

Project name: NM23A

Status: done

submitted: 2025-04-15 06:15:52, status changed: 2025-04-15 08:47:53

Project settings

Protein sequence(s)	MANSERTFIAIKPDGVQRSLVGEIIKRFEQKGFRLIAMKLIQASEDLLKEHYIDLKDRPFFAGLVKYMQSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFQPEELVDYKSCAQNWIYE input pdb
Peptide sequence	FRENAKAKTDHGAEI
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	31.3479	5.77392	25.7262	181
cluster_2.pdb ( medoid)	24.3951	3.32034	14.1316	81
cluster_3.pdb ( medoid)	23.7171	6.8305	32.7023	162
cluster_4.pdb ( medoid)	21.4622	5.8242	33.3119	125
cluster_5.pdb ( medoid)	17.4789	4.40531	11.0339	77
cluster_6.pdb ( medoid)	15.4962	4.58177	24.8233	71
cluster_7.pdb ( medoid)	14.7611	9.34887	35.8163	138
cluster_8.pdb ( medoid)	13.7157	3.71836	10.951	51
cluster_9.pdb ( medoid)	7.28085	3.29632	4.76093	24
cluster_10.pdb ( medoid)	5.7251	15.7202	39.4255	90