Project name: JSLEE_22

Status: done

submitted: 2023-11-28 06:03:18, status changed: 2023-11-28 07:32:13

Project settings
Protein sequence(s) SRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSWWMLNPEGG input pdb
Peptide sequence DLMLSPDDIEQWFTED
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCCCCCC
Contact information
146:A 5:PEP 10.0 1.0
126:A 13:PEP 6.0 1.0
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 29.4975 3.66133 21.499 108
cluster_2.pdb ( medoid) 28.9272 4.83973 17.6144 140
cluster_3.pdb ( medoid) 25.9727 5.08226 13.3906 132
cluster_4.pdb ( medoid) 25.2276 5.74768 15.8516 145
cluster_5.pdb ( medoid) 24.1572 4.59491 18.7611 111
cluster_6.pdb ( medoid) 20.14 5.90863 13.4821 119
cluster_7.pdb ( medoid) 11.6523 6.69393 15.5128 78
cluster_8.pdb ( medoid) 10.967 6.47395 15.0236 71
cluster_9.pdb ( medoid) 10.331 6.8725 13.004 71
cluster_10.pdb ( medoid) 3.5256 7.09099 12.3845 25