CABS-dock: b5f5aaa4637c291

Project name: b5f5aaa4637c291

Status: done

submitted: 2026-02-18 09:16:19, status changed: 2026-02-18 10:09:51

Project settings

Protein sequence(s)	DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA input pdb
Peptide sequence	RRRKLVFFP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.9972	5.19287	20.6262	135
cluster_2.pdb ( medoid)	21.6141	8.42042	33.6963	182
cluster_3.pdb ( medoid)	14.6237	8.20583	23.1412	120
cluster_4.pdb ( medoid)	14.2166	7.10438	26.7031	101
cluster_5.pdb ( medoid)	13.7999	7.97105	22.7605	110
cluster_6.pdb ( medoid)	11.9476	9.45795	24.4616	113
cluster_7.pdb ( medoid)	9.38363	8.63206	34.1337	81
cluster_8.pdb ( medoid)	7.98033	7.01725	38.928	56
cluster_9.pdb ( medoid)	5.81088	9.12082	18.1696	53
cluster_10.pdb ( medoid)	3.8775	12.637	30.0662	49