CABS-dock: 6) C0HL39

Project name: 6) C0HL39

Status: done

submitted: 2026-01-14 04:53:49, status changed: 2026-01-14 07:35:40

Project settings

Protein sequence(s)	MSRIILFAAILAIIAVSANGASNLPALDMASIPDEYKDLVPPEVTTFYNELTEDDKKILKEVAEKHSEYATDEDALNALKEKSEKLYTKANELRNLVKDRISKLNPEAKTFVDTIIEKLKALRPKEDEKPNLTELRKEANEIVEKFKALSEEAKESLKTNFPKITGVIQNEKFQKLAQSLLKPEGAAAPA input pdb
Peptide sequence	SFGDGFADF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	53.9543	2.37238	6.47092	128
cluster_2.pdb ( medoid)	35.7732	6.90461	30.4727	247
cluster_3.pdb ( medoid)	27.6176	6.01066	36.5854	166
cluster_4.pdb ( medoid)	14.482	7.31941	20.3608	106
cluster_5.pdb ( medoid)	10.1827	10.017	24.1149	102
cluster_6.pdb ( medoid)	7.7791	11.9551	33.7779	93
cluster_7.pdb ( medoid)	6.71372	10.1285	31.5439	68
cluster_8.pdb ( medoid)	3.15101	10.7902	19.4993	34
cluster_9.pdb ( medoid)	3.07989	10.39	19.9158	32
cluster_10.pdb ( medoid)	2.21559	10.8323	22.5566	24