CABS-dock: b62734ed951bffb

Project name: b62734ed951bffb

Status: done

submitted: 2026-04-20 01:11:14, status changed: 2026-04-20 08:03:15

Project settings

Protein sequence(s)	GEAPNQALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLVIQGDERMHLMDEEDMDDVVDADEYLIP input pdb
Peptide sequence	GIFGGFMLGVKSISGMAFSF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCEEEECEEEECEECCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	34.9728	5.26124	27.8217	184
cluster_2.pdb ( medoid)	24.2876	4.57023	29.5215	111
cluster_3.pdb ( medoid)	16.8405	6.53185	34.0573	110
cluster_4.pdb ( medoid)	12.1737	8.70731	20.0074	106
cluster_5.pdb ( medoid)	11.5215	10.3285	23.0768	119
cluster_6.pdb ( medoid)	11.4877	11.4906	45.4392	132
cluster_7.pdb ( medoid)	6.37344	16.3177	44.3706	104
cluster_8.pdb ( medoid)	4.07645	12.2656	41.0552	50
cluster_9.pdb ( medoid)	3.06353	18.9324	38.5754	58
cluster_10.pdb ( medoid)	2.59403	10.023	27.6374	26