CABS-dock: b67e14b3deb9f1f

Project name: b67e14b3deb9f1f

Status: done

submitted: 2026-04-14 05:21:53, status changed: 2026-04-14 13:54:03

Project settings

Protein sequence(s)	MNQIQTMRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGIRYLDGCRALLEEFDQLEASVERAVHEPVGTLRVAVSGLLSPGRITPLVDSYRRQYPKVRVQLTLTEGQLDVIEAGYDAGLVTGGRLDGNPALIGHPLMPNTLALCAAPSYIERHGAPHRPDDLIRHACIALPAGQHASTWRFVDPDHFTHVVSLQPVYTVNSASMVRAATLAGTGISVLPESYIADALESGELVRILGDYRIDDPDTQLSIVYPNRQFLPARTRSFVEHALYHLGGQKTETNGHYFMREAGTAKRPDVVAGLQ input pdb
Peptide sequence	VVIPIELR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.0747	0.825461	1.49606	24
cluster_2.pdb ( medoid)	28.5369	5.60677	11.5192	160
cluster_3.pdb ( medoid)	25.5143	4.03695	46.0833	103
cluster_4.pdb ( medoid)	24.3941	4.4273	21.9944	108
cluster_5.pdb ( medoid)	20.7141	5.64834	13.2386	117
cluster_6.pdb ( medoid)	18.9933	3.21166	16.1463	61
cluster_7.pdb ( medoid)	12.9573	2.85553	8.02607	37
cluster_8.pdb ( medoid)	11.1167	4.67763	10.6458	52
cluster_9.pdb ( medoid)	8.90117	13.369	42.8661	119
cluster_10.pdb ( medoid)	6.36545	2.98486	8.58696	19