CABS-dock: b6b614b84b9e5f8

Project name: b6b614b84b9e5f8

Status: done

submitted: 2026-03-08 17:12:24, status changed: 2026-03-08 21:47:26

Project settings

Protein sequence(s)	KNLVYALLGINVAVFGLWQLPKCWRFLQKYMLLQKDYVTSKISIIGSAFSHQEFWHLGMNMLALWSFGTSLATMLGASNFFSLYMNSAIAGSLFALWYPKLARLAIVGPALGASGALFGVLGCFSYLFPHAKILLFVFPVPGGAWVAFLASVAWNAAGCALRWGSFAYAAHLGGSMMGVLYGWYISKAVEKQRQRRLQAAGRWF input pdb
Peptide sequence	TVPTATLIAA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	104.437	0.957519	2.93411	100
cluster_2.pdb ( medoid)	59.9929	3.60043	12.0613	216
cluster_3.pdb ( medoid)	52.7643	2.1795	9.71026	115
cluster_4.pdb ( medoid)	26.9079	4.97994	14.3659	134
cluster_5.pdb ( medoid)	22.2086	4.59282	23.9623	102
cluster_6.pdb ( medoid)	20.4396	5.47955	16.4111	112
cluster_7.pdb ( medoid)	14.2015	4.29532	13.5899	61
cluster_8.pdb ( medoid)	13.6095	2.49825	6.89228	34
cluster_9.pdb ( medoid)	12.367	6.38796	13.2448	79
cluster_10.pdb ( medoid)	8.3497	5.62895	12.2343	47