CABS-dock: b6eb44af859101d

Project name: b6eb44af859101d

Status: done

submitted: 2026-07-27 06:02:04, status changed: 2026-07-27 09:18:36

Project settings

Protein sequence(s)	ETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR input pdb
Peptide sequence	LQGKRQWDLV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	38.2086	6.80474	20.0021	260
cluster_2.pdb ( medoid)	23.8676	5.86569	16.3689	140
cluster_3.pdb ( medoid)	22.5495	6.43029	29.1819	145
cluster_4.pdb ( medoid)	20.2417	5.43433	16.644	110
cluster_5.pdb ( medoid)	18.0815	6.58132	21.8321	119
cluster_6.pdb ( medoid)	10.4983	4.28639	19.9454	45
cluster_7.pdb ( medoid)	10.1405	4.33905	8.31115	44
cluster_8.pdb ( medoid)	9.85424	6.39318	14.9304	63
cluster_9.pdb ( medoid)	6.34976	4.25213	10.3219	27
cluster_10.pdb ( medoid)	3.51235	13.3813	35.7326	47