CABS-dock: 4) G8G235

Project name: 4) G8G235

Status: done

submitted: 2026-01-14 04:50:11, status changed: 2026-01-14 07:53:25

Project settings

Protein sequence(s)	MSRIILFAAILAIIAVSANGASNLPALDMASIPDEYKDLVPPEVTTFYNELTEDDKKILKEVAEKHSEYATDEDALNALKEKSEKLYTKANELRNLVKDRISKLNPEAKTFVDTIIEKLKALRPKEDEKPNLTELRKEANEIVEKFKALSEEAKESLKTNFPKITGVIQNEKFQKLAQSLLKPEGAAAPA input pdb
Peptide sequence	MKKAVIVENKGCATCSIGAACLV
Simulation mc cycles	50
Peptide secondary structure psipred	CCEEEEECCCCCCEECCCCEEEC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	22.8443	4.42123	18.4405	101
cluster_2.pdb ( medoid)	16.9996	4.58835	21.3978	78
cluster_3.pdb ( medoid)	14.9345	8.16901	24.73	122
cluster_4.pdb ( medoid)	13.3224	2.70221	11.4656	36
cluster_5.pdb ( medoid)	12.9405	12.5961	36.0532	163
cluster_6.pdb ( medoid)	11.7832	10.6932	32.011	126
cluster_7.pdb ( medoid)	8.84168	13.9114	33.1205	123
cluster_8.pdb ( medoid)	6.90695	13.4647	34.1094	93
cluster_9.pdb ( medoid)	6.4829	11.5689	35.3586	75
cluster_10.pdb ( medoid)	5.59809	14.8265	29.3665	83