CABS-dock: b8045033f8fe5f7

Project name: b8045033f8fe5f7

Status: done

submitted: 2026-02-27 07:43:34, status changed: 2026-02-27 13:46:17

Project settings

Protein sequence(s)

NIVLTQSPVSLAVSLGQRATISCRASKSVSTSGYSYMHWYQQKPGQPPRLLLYLGSNLESGVPARFSGSGSGTDFTLNIPVEEEDAATYYCQHIRELTRSFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN input pdb

Peptide sequence

CQLINTNGSWHIC

Simulation mc cycles

Peptide secondary structure psipred

CCEECCCCCEEEC

Contact information

1:SC B 13:SC B 3.8 1.0

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.3954	6.6677	16.7822	196
cluster_2.pdb ( medoid)	27.5167	4.65172	23.406	128
cluster_3.pdb ( medoid)	16.6036	7.76941	27.1785	129
cluster_4.pdb ( medoid)	12.0779	11.5087	35.958	139
cluster_5.pdb ( medoid)	10.0825	7.14107	21.6519	72
cluster_6.pdb ( medoid)	9.65062	7.56428	33.7857	73
cluster_7.pdb ( medoid)	7.45067	12.6163	32.0884	94
cluster_8.pdb ( medoid)	7.02752	6.83029	15.7081	48
cluster_9.pdb ( medoid)	5.73129	15.0053	36.4007	86
cluster_10.pdb ( medoid)	2.92495	11.966	22.4048	35