CABS-dock: b805a479d00e1f

Project name: b805a479d00e1f

Status: done

submitted: 2026-03-09 05:00:47, status changed: 2026-03-09 07:33:12

Project settings

Protein sequence(s)	APYGARMPFGGQVPLGAPPPFPTWPGCPQPPPLHAWQAGTPPPPSPQPAAFPQSLPFPQSPAFPTASPAPPQSPGLQPLIIHHAQMVQLGLNNHMWNQRGSQAPEDKTQEAE input pdb
Peptide sequence	VQLFGSNDA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	22.1441	5.69	21.9731	126
cluster_2.pdb ( medoid)	21.369	5.8496	27.9923	125
cluster_3.pdb ( medoid)	16.2245	9.4302	27.4292	153
cluster_4.pdb ( medoid)	13.5471	10.1867	25.1674	138
cluster_5.pdb ( medoid)	10.7949	6.20666	16.9638	67
cluster_6.pdb ( medoid)	10.1665	10.0329	23.9119	102
cluster_7.pdb ( medoid)	8.7178	9.63546	22.6555	84
cluster_8.pdb ( medoid)	7.73345	11.1205	21.1894	86
cluster_9.pdb ( medoid)	6.2613	12.9366	29.1287	81
cluster_10.pdb ( medoid)	5.12533	7.41416	15.0256	38