CABS-dock: b851799618d240c

Project name: b851799618d240c

Status: done

submitted: 2026-07-09 04:53:07, status changed: 2026-07-09 09:06:33

Project settings

Protein sequence(s)	GSHMMLEADLELERAADVRRWEEQAEISSGSSSPPILSSISIKNEEEEQTLGLLEDGAYRIKQKGILGYSQIGAGVYYKEGTFHTMWHVTRRRGAVLMHKGKRIEPSWADVKKDLISYGGGGWKLEGEWKEGEEVQVLLALEPGKNPRAVQTKPGLFKTNTGTIGAVSLDFSPGTSGSPIVDKKGKVVGLYGNGVVVVTRSGAYYVSAIAN input pdb
Peptide sequence	QDYGAGNGMHGYDHL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	27.4265	4.12011	30.2622	113
cluster_2.pdb ( medoid)	18.7736	5.85931	38.7433	110
cluster_3.pdb ( medoid)	16.4224	7.1853	39.6007	118
cluster_4.pdb ( medoid)	15.4203	7.32798	23.0878	113
cluster_5.pdb ( medoid)	15.2273	7.02684	23.9432	107
cluster_6.pdb ( medoid)	13.1944	8.26109	23.0701	109
cluster_7.pdb ( medoid)	11.0818	11.6407	35.283	129
cluster_8.pdb ( medoid)	8.6814	8.1784	20.5635	71
cluster_9.pdb ( medoid)	7.42042	12.1287	33.6516	90
cluster_10.pdb ( medoid)	2.99093	13.3738	31.4711	40