CABS-dock: b8527e4228c708f

Project name: b8527e4228c708f

Status: done

submitted: 2026-07-01 11:02:52, status changed: 2026-07-01 20:21:53

Project settings

Protein sequence(s)	FIFHKVLGKGSFGKVLLGELKGRGEYFAIKALKKDVVLIDDDVECTMVEKRVLTLAAENPFLTHLICTFQTKDHLFFVMEFLNGGDLMYHIQDKGRFELYRATFYAAEIMCGLQFLHSKGIIYRDLKLDNVLLDRDGHIKIADFGMCKENIFGESRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESIRVDTPHYPRWITKESKDILEKLFEREPTKRLGVTGNIKIHPFFKTINWTLLEKRRLEPPFRPKVKSPRDYSNFDQEFLNEKARLSYSDKNLIDSMDQSAFAGFSFVNPKFEHLLED input pdb
Peptide sequence	RQLSSGVAEIRHTAD
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	37.7922	1.34948	13.7567	51
cluster_2.pdb ( medoid)	29.6706	10.0773	38.1531	299
cluster_3.pdb ( medoid)	24.1168	5.01725	17.2383	121
cluster_4.pdb ( medoid)	18.8321	6.7969	15.7493	128
cluster_5.pdb ( medoid)	18.3441	5.6694	33.3224	104
cluster_6.pdb ( medoid)	14.3599	5.2925	11.9676	76
cluster_7.pdb ( medoid)	11.7063	6.06513	20.6878	71
cluster_8.pdb ( medoid)	8.03108	7.72001	32.7037	62
cluster_9.pdb ( medoid)	6.49545	8.15956	17.9744	53
cluster_10.pdb ( medoid)	4.8498	7.21679	14.3372	35