CABS-dock: elm2

Project name: elm2

Status: done

submitted: 2026-02-20 11:15:31, status changed: 2026-02-20 13:08:22

Project settings

Protein sequence(s)	TNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELGISQ input pdb
Peptide sequence	GVQIPLKEYGRAPVPGPRRGKRIASKVKHF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCHHHCCCCCCCCCCCCCCCHHHCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	117.792	0.848953	2.7102	100
cluster_2.pdb ( medoid)	15.7731	8.43206	24.4095	133
cluster_3.pdb ( medoid)	15.3821	7.08618	27.5051	109
cluster_4.pdb ( medoid)	15.3234	8.67954	22.4152	133
cluster_5.pdb ( medoid)	15.253	10.6208	23.3901	162
cluster_6.pdb ( medoid)	9.41604	10.8326	27.6032	102
cluster_7.pdb ( medoid)	9.36052	7.15772	19.8583	67
cluster_8.pdb ( medoid)	7.70416	14.5376	35.5356	112
cluster_9.pdb ( medoid)	6.92456	6.20978	21.5664	43
cluster_10.pdb ( medoid)	6.3218	6.16913	15.8245	39