CABS-dock: FOLD

Project name: FOLD_236-TRAIL

Status: done

submitted: 2025-12-26 17:41:39, status changed: 2025-12-26 22:14:11

Project settings

Protein sequence(s)	SSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVHK input pdb
Peptide sequence	MKSARNSCWSKDAE
Simulation mc cycles	100
Peptide secondary structure psipred	CCCCCHHCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	32.4712	6.1285	20.5979	199
cluster_2.pdb ( medoid)	20.5909	8.01324	29.4677	165
cluster_3.pdb ( medoid)	15.7984	7.08931	25.0944	112
cluster_4.pdb ( medoid)	10.3531	7.24417	20.6515	75
cluster_5.pdb ( medoid)	10.3098	9.21457	19.8785	95
cluster_6.pdb ( medoid)	9.12693	6.68352	14.006	61
cluster_7.pdb ( medoid)	7.92199	12.2444	25.8222	97
cluster_8.pdb ( medoid)	7.54569	10.337	21.512	78
cluster_9.pdb ( medoid)	5.99938	7.83415	25.1533	47
cluster_10.pdb ( medoid)	4.23033	16.7836	34.6376	71