CABS-dock: PEPTIDE2 WITH IL9 RECEPTOR

Project name: PEPTIDE2 WITH IL9 RECEPTOR

Status: done

submitted: 2026-03-19 05:35:22, status changed: 2026-03-19 10:57:22

Project settings

Protein sequence(s)	QGPRSRTFTCLTNNILRIDCHWSAPELGQGSSPWLLFTSNQAPGGTHKCILRGSECTVVLPPEAVLVPSDNFTITFHHCMSGREQVSLVDPEYLPRRHVKLDPPSDLQSNISSGHCILTWSISPALEPMTTLLSYELAFKKQEEAWEQAQHRDHIVGVTWLILEAFELDPGFIHEARLRVQMATLEDDVVEEERYTGQWSEWSQPVCFQA input pdb
Peptide sequence	GNALTFLKSLLEIFQKEKMR
Simulation mc cycles	50
Peptide secondary structure psipred	CCHHHHHHHHHHHHHHHHHC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	21.7559	6.43505	20.8829	140
cluster_2.pdb ( medoid)	16.5265	10.7706	27.5039	178
cluster_3.pdb ( medoid)	16.1152	8.62539	24.8974	139
cluster_4.pdb ( medoid)	15.8387	7.76579	20.4724	123
cluster_5.pdb ( medoid)	11.5534	7.18403	18.6709	83
cluster_6.pdb ( medoid)	10.3845	9.43715	32.4729	98
cluster_7.pdb ( medoid)	7.90686	12.2678	27.6826	97
cluster_8.pdb ( medoid)	4.96141	13.1011	30.8919	65
cluster_9.pdb ( medoid)	4.64464	9.90389	22.3485	46
cluster_10.pdb ( medoid)	2.6108	11.8738	28.1943	31