CABS-dock: bacfe43c05b73f4

Project name: bacfe43c05b73f4

Status: done

submitted: 2026-07-09 21:03:32, status changed: 2026-07-10 04:58:34

Project settings

Protein sequence(s)	GSHSMRYFTTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQERPEYWDQETRNVKAHSQIDRVDLGTLRGYYNQSEAGSHTIQMMYGCDVGSDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWEAARVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDPPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWMIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM input pdb
Peptide sequence	GTLWYNLLR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCHHCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	43.4835	4.50745	25.2978	196
cluster_2.pdb ( medoid)	33.4023	5.5086	21.6891	184
cluster_3.pdb ( medoid)	33.3158	2.55134	9.52227	85
cluster_4.pdb ( medoid)	21.927	5.60951	14.0655	123
cluster_5.pdb ( medoid)	12.6613	6.47644	33.9749	82
cluster_6.pdb ( medoid)	9.18177	10.3466	39.56	95
cluster_7.pdb ( medoid)	8.6878	5.75519	15.8043	50
cluster_8.pdb ( medoid)	7.98389	9.64442	22.8909	77
cluster_9.pdb ( medoid)	4.88133	15.9793	41.1069	78
cluster_10.pdb ( medoid)	2.16418	13.8621	27.4472	30