CABS-dock: TJ12P2

Project name: TJ12P2

Status: done

submitted: 2026-07-15 05:45:36, status changed: 2026-07-15 14:53:36

Project settings

Protein sequence(s)

CHQVRGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEIDKYWREYILSLEELVNGMDMENVLLGLFSTIHDSIQYVQKNAGKLTTTIGKLCTLSSRRRELIQKLKSFISFYSALPGYICSHSPVAENDTLCWNGQELVERYSQEPVVSQIIDKLKHINQLLRTMS input pdb

Peptide sequence

SNDRPPNILQKR

Simulation mc cycles

Peptide secondary structure psipred

CCCCCCCHHCCC

Unlikely to bind regions

383:A - 392:A	466:A - 477:A	148:A - 166:A	305:A - 323:A	251:A - 281:A
35:A - 92:A

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.5691	3.38191	8.87848	100
cluster_2.pdb ( medoid)	23.12	8.43426	37.9817	195
cluster_3.pdb ( medoid)	18.1754	5.9421	37.6547	108
cluster_4.pdb ( medoid)	14.9554	8.62567	28.6501	129
cluster_5.pdb ( medoid)	11.8182	11.3384	39.4285	134
cluster_6.pdb ( medoid)	10.2638	6.1381	14.0143	63
cluster_7.pdb ( medoid)	8.33031	2.64096	15.1143	22
cluster_8.pdb ( medoid)	7.46829	12.7204	34.1556	95
cluster_9.pdb ( medoid)	6.56783	20.8593	56.3084	137
cluster_10.pdb ( medoid)	1.03772	16.3821	42.4797	17