CABS-dock: bb17f87219ff488

Project name: bb17f87219ff488

Status: done

submitted: 2026-03-13 11:33:43, status changed: 2026-03-14 01:03:24

Project settings

Protein sequence(s)	MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLTSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASIIYQHNPINMICQNGPNSWISIANSEAIQIGHGNIITRQTVSREDGSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRDIGQPITPSHSKLTPKLETMTLGNRSHKAAEGSHYVDEASHEGSWWGGGI input pdb
Peptide sequence	RRRWKKVQLFGSNDA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCEEEEECCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	69.0276	1.46318	13.6252	101
cluster_2.pdb ( medoid)	28.4913	4.24691	26.6483	121
cluster_3.pdb ( medoid)	18.7884	5.26921	14.7653	99
cluster_4.pdb ( medoid)	17.0092	3.82147	10.2495	65
cluster_5.pdb ( medoid)	10.1733	3.44039	8.16538	35
cluster_6.pdb ( medoid)	9.32217	8.79624	17.5054	82
cluster_7.pdb ( medoid)	6.32572	8.06232	19.0182	51
cluster_8.pdb ( medoid)	5.76024	9.37461	21.0599	54
cluster_9.pdb ( medoid)	4.49246	10.462	19.3511	47
cluster_10.pdb ( medoid)	4.4065	10.2122	21.4222	45