CABS-dock: AB42-RF8

Project name: AB42-RF8

Status: done

submitted: 2026-06-12 07:34:07, status changed: 2026-06-12 08:07:15

Project settings

Protein sequence(s)	DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA input pdb
Peptide sequence	RWSLMRPF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	39.9682	2.00159	18.8531	80
cluster_2.pdb ( medoid)	36.7641	4.73288	12.019	174
cluster_3.pdb ( medoid)	33.9491	4.03545	18.8213	137
cluster_4.pdb ( medoid)	32.9188	4.16176	14.9906	137
cluster_5.pdb ( medoid)	28.8888	4.4654	10.7435	129
cluster_6.pdb ( medoid)	17.987	7.61663	22.3711	137
cluster_7.pdb ( medoid)	13.9089	3.45104	14.9394	48
cluster_8.pdb ( medoid)	12.7412	4.94459	12.8226	63
cluster_9.pdb ( medoid)	7.06916	7.49735	22.1445	53
cluster_10.pdb ( medoid)	4.01459	10.4619	24.2288	42