CABS-dock: d3

Project name: d3_12

Status: done

submitted: 2026-06-03 02:39:08, status changed: 2026-06-03 12:11:46

Project settings

Protein sequence(s)	SLELQEHCSLKPYNTFGIDVRARLLAHARDEADVREALALARERGLPLLVIGGGSNLLLTRDVEALVLRMASQGRRIVSDAADSVLVEAEAGEAWDPFVQWSLERGLAGLENLSLIPGTVGAAPMQNIGAYGVELKDVFDSLTALDRQDGTLREFDRQACRFGYRDSLFKQEPDRWLILRVRLRLTRRERLHLDYGPVRQRLEEEGIASPTARDVSRVICAIRREKLPDPAVLGNAGSFFKNPLVDATQAERLRQAFPDLVGYPQADGRLKLAAGWLIDKGGWKGFRDGPVGVHAQQALVLVNHGGATGAQVRALAERIQEDVRRRFGVELEPEPNLY input pdb
Peptide sequence	PQNFLPPLQPAVMVPFLQPK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCEECCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	38.2296	1.33404	2.73287	51
cluster_2.pdb ( medoid)	25.5577	4.4605	21.969	114
cluster_3.pdb ( medoid)	20.9865	10.197	25.1432	214
cluster_4.pdb ( medoid)	18.9667	3.42705	6.76078	65
cluster_5.pdb ( medoid)	18.8824	7.89097	22.8351	149
cluster_6.pdb ( medoid)	13.3405	6.59643	22.8324	88
cluster_7.pdb ( medoid)	12.1086	7.18497	25.7656	87
cluster_8.pdb ( medoid)	11.4079	8.23988	22.1869	94
cluster_9.pdb ( medoid)	5.88133	11.222	20.6652	66
cluster_10.pdb ( medoid)	3.78991	18.9978	38.3446	72