CABS-dock: E7B17

Project name: E7B17

Status: done

submitted: 2026-06-03 16:55:12, status changed: 2026-06-03 17:32:53

Project settings

Protein sequence(s)	RLKSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR input pdb
Peptide sequence	EEEEEEGSSKAGAWEAFSSLSGSRVGSSGK
Simulation mc cycles	10
Peptide secondary structure psipred	CHHHHHHCCCCHHHHHHHHHCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.7735	4.33272	22.0925	129
cluster_2.pdb ( medoid)	26.9421	3.86013	21.0744	104
cluster_3.pdb ( medoid)	24.4246	4.29895	19.2808	105
cluster_4.pdb ( medoid)	20.6737	10.2062	23.4836	211
cluster_5.pdb ( medoid)	14.6447	6.55526	25.1893	96
cluster_6.pdb ( medoid)	13.8126	7.74657	23.7504	107
cluster_7.pdb ( medoid)	11.5176	5.29626	17.7518	61
cluster_8.pdb ( medoid)	8.42097	11.8751	33.4793	100
cluster_9.pdb ( medoid)	6.53838	9.32952	19.0306	61
cluster_10.pdb ( medoid)	2.70976	9.59493	15.2524	26