CABS-dock: Intento

Project name: Intento_1

Status: done

submitted: 2026-04-04 23:36:43, status changed: 2026-04-05 04:57:55

Project settings

Protein sequence(s)	FDESRVLGVGGFGKVYRGEIDGGTTKVAIKRGNPMSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAHGTMREHLYKTQNPSLPWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDHTHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCARPALNPTLAKEQVSLAEWAPYCYKKGMLDQIVDPYLKGKITPECFKKFAETAMKCVLDQGIERPSMGDVLWNLEF input pdb
Peptide sequence	GPGLYTEIGKK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	62.7033	2.02541	7.13078	127
cluster_2.pdb ( medoid)	52.5544	1.2939	3.35471	68
cluster_3.pdb ( medoid)	43.6521	2.47411	34.5127	108
cluster_4.pdb ( medoid)	38.7354	3.64008	36.2624	141
cluster_5.pdb ( medoid)	20.9613	6.63128	38.1601	139
cluster_6.pdb ( medoid)	14.5948	6.30361	24.4083	92
cluster_7.pdb ( medoid)	14.0857	6.74442	14.0035	95
cluster_8.pdb ( medoid)	11.9627	8.4429	39.3229	101
cluster_9.pdb ( medoid)	10.2036	4.90023	9.59959	50
cluster_10.pdb ( medoid)	3.67184	21.5151	41.7897	79