CABS-dock: be6ecf465f1d42

Project name: be6ecf465f1d42

Status: done

submitted: 2026-01-16 18:23:39, status changed: 2026-01-17 02:51:31

Project settings

Protein sequence(s)	HQPGENCQNKCGNITIEYPFGISSGCYYPGNESFSITCKEDRPHVLSDIEVANFNHSGQLQVLLNRSSTCYDEQGKKTEEDSSFTLENLSLSANNKLTAVGCNALSLLDTFGMQNYSTACLSLCDSPPEADGECNGRGCCRVDVSAPLDSYTFETTSGRIKHMTSFHDFSPCTYAFLVEDDKFNFSSTEDLLNLRNVMRFPVLLDWSVGNQTCEQVGSTSICGGNSTCLDSTPRNGYICRCNEGFDGNPYLSAGCQDVNECTTSSTIHRHNCSDPKTCRNKVGGFYCKCQSGYRLDTTTMSCKRKEF input pdb
Peptide sequence	IDNFKADDFGTMVRTNGGKQFDDMS
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCHHHHCCEEECCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	60.7205	1.64689	3.26175	100
cluster_2.pdb ( medoid)	38.3025	2.61079	5.36386	100
cluster_3.pdb ( medoid)	23.6363	4.06156	14.1236	96
cluster_4.pdb ( medoid)	23.4534	3.62421	7.12859	85
cluster_5.pdb ( medoid)	22.5208	5.41722	23.0804	122
cluster_6.pdb ( medoid)	16.8574	7.05923	33.1302	119
cluster_7.pdb ( medoid)	13.3973	9.03165	22.6278	121
cluster_8.pdb ( medoid)	12.5748	8.50908	20.4449	107
cluster_9.pdb ( medoid)	12.4457	7.63313	19.4826	95
cluster_10.pdb ( medoid)	4.78585	11.4922	28.8556	55