CABS-dock: LepB_3A

Project name: LepB_3A_Guide

Status: done

submitted: 2026-06-03 03:12:24, status changed: 2026-06-03 10:03:25

Project settings

Protein sequence(s)	RSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDGLRLSRIGGIH input pdb
Peptide sequence	MLSFAADAAAEGDD
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHHHHHHHCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	28.2951	6.32618	17.174	179
cluster_2.pdb ( medoid)	21.7199	6.76799	12.5772	147
cluster_3.pdb ( medoid)	16.9695	6.01078	13.6827	102
cluster_4.pdb ( medoid)	13.7093	6.78373	12.74	93
cluster_5.pdb ( medoid)	13.5183	6.65765	12.7653	90
cluster_6.pdb ( medoid)	13.4769	6.38128	11.2376	86
cluster_7.pdb ( medoid)	11.9014	8.31832	14.9511	99
cluster_8.pdb ( medoid)	9.78796	8.07114	14.6051	79
cluster_9.pdb ( medoid)	7.74677	8.51968	17.8776	66
cluster_10.pdb ( medoid)	6.89011	6.96651	13.6125	48