Project name: 02-Complex-T1R1-LEP-2_CabsDock-v1

Status: done

submitted: 2025-05-29 17:48:19, status changed: 2025-05-30 12:37:21
Project settings
Protein sequence(s) HSTESSPDFTLPGDYLLAGLFPLHSGCLQVRHRPEVTLCDRSCSFNEHGYHLFQAMRLGVEEINNSTALLPNITLGYQLYDVCSDSANVYATLRVLSLPGQHHIELQGDLLHYSPTVLAVIGPDSTNRAATTAALLSPFLVPMISYAASSETLSVKRQYPSFLRTIPNDKYQVETMVLLLQKFGWTWISLVGSSDDYGQLGVQALENQATGQGICIAFKDIMPFSAQVGDERMQCLMRHLAQAGATVVVVFSSRQLARVFFESVVLTNLTGKVWVASEAWALSRHITGVPGIQRIGMVLGVAIQKRAVPGLKAFEEAYARADKKAPRPCHKGSWCSSNQLCRECQAFMAHTMPKLKAFSMSSAYNAYRAVYAVAHGLHQLLGCASGACSRGRVYPWQLLEQIHKVHFLLHKDTVAFNDNRDPLSSYNIIAWDWNGPKWTFTVLGSSTWSPVQLNINETKIQWHGKDNQVPKSV input pdb
Peptide sequence TRVETEGGSIR
Simulation mc cycles100
Peptide secondary structure psipred CCCCCCCCCCC
Contact information
170:A 1:PEP 5.0 1.0
170:A 2:PEP 5.0 1.0
170:A 3:PEP 5.0 1.0
170:A 4:PEP 5.0 1.0
170:A 5:PEP 5.0 1.0
170:A 6:PEP 5.0 1.0
170:A 7:PEP 5.0 1.0
170:A 8:PEP 5.0 1.0
170:A 9:PEP 5.0 1.0
170:A 10:PEP 5.0 1.0
170:A 11:PEP 5.0 1.0
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 98.1875 2.06747 5.7909 203
cluster_2.pdb ( medoid) 56.0543 3.03277 6.61838 170
cluster_3.pdb ( medoid) 39.9276 3.23085 8.3233 129
cluster_4.pdb ( medoid) 38.5729 2.48879 4.90644 96
cluster_5.pdb ( medoid) 38.3317 1.25223 4.3825 48
cluster_6.pdb ( medoid) 37.8355 3.62094 10.3684 137
cluster_7.pdb ( medoid) 28.4818 2.94925 5.38679 84
cluster_8.pdb ( medoid) 25.633 1.36543 4.38561 35
cluster_9.pdb ( medoid) 14.0257 5.91773 10.6873 83
cluster_10.pdb ( medoid) 7.14804 2.09848 4.60831 15

 
Laboratory of Computational Biology, 2020