CABS-dock: c058eb536c67ae4

Project name: c058eb536c67ae4

Status: done

submitted: 2026-04-12 00:34:24, status changed: 2026-04-12 06:14:37

Project settings

Protein sequence(s)	MSAAGVRSTRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVYRRCSEHHHHHLVCRSCGSTIEVGDHEVEAWAAEVATKHGFSDVSHTIEIFGTCSDCRSMSAAGVRSTRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVYRRCSEHHHHHLVCRSCGSTIEVGDHEVEAWAAEVATKHGFSDVSHTIEIFGTCSDCRS input pdb
Peptide sequence	GRWYRQMCGVYVGVYWGRPYPGFGG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHHHCCEEEEEECCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	48.8373	2.08857	20.1969	102
cluster_2.pdb ( medoid)	39.6573	2.54682	28.6905	101
cluster_3.pdb ( medoid)	18.4124	5.15958	12.0969	95
cluster_4.pdb ( medoid)	16.0106	8.99405	22.9885	144
cluster_5.pdb ( medoid)	15.6283	9.40601	22.6253	147
cluster_6.pdb ( medoid)	14.9148	7.64343	25.5468	114
cluster_7.pdb ( medoid)	13.0458	8.50847	31.8362	111
cluster_8.pdb ( medoid)	6.56717	9.28863	31.0481	61
cluster_9.pdb ( medoid)	6.51605	10.2823	20.6051	67
cluster_10.pdb ( medoid)	5.17126	11.2158	22.2031	58