CABS-dock: c06f197123bd299

Project name: c06f197123bd299

Status: done

submitted: 2026-01-21 14:59:53, status changed: 2026-01-21 17:26:13

Project settings

Protein sequence(s)	GTVFTTVEDLLGSKILLTCSLDDSTEVTGHRWLKGGVVLKEDALPGQKTEFKVDSSDDQWGEYSCVFLPEPMGTANIQLHG input pdb
Peptide sequence	VPSENDGTFTSNLTGHTKKT
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCEECCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	46.101	2.19084	20.4923	101
cluster_2.pdb ( medoid)	33.9348	5.92312	19.9969	201
cluster_3.pdb ( medoid)	27.5662	3.99039	26.2891	110
cluster_4.pdb ( medoid)	22.0575	6.93642	25.6889	153
cluster_5.pdb ( medoid)	12.3039	8.53389	17.6451	105
cluster_6.pdb ( medoid)	10.3152	10.9547	24.5577	113
cluster_7.pdb ( medoid)	9.71399	7.30904	17.141	71
cluster_8.pdb ( medoid)	6.7783	9.88448	23.5846	67
cluster_9.pdb ( medoid)	6.39706	7.97241	19.3263	51
cluster_10.pdb ( medoid)	2.59075	10.8077	25.4112	28