CABS-dock: c0ec827fb55fe26

Project name: c0ec827fb55fe26

Status: done

submitted: 2026-06-23 12:42:10, status changed: 2026-06-23 20:25:42

Project settings

Protein sequence(s)	GEAPNQALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLVIQGDERMHLMDEEDMDDVVDADEYLIP input pdb
Peptide sequence	AEDG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	35.648	6.00314	29.3741	214
cluster_2.pdb ( medoid)	23.9804	4.54538	32.7851	109
cluster_3.pdb ( medoid)	22.6728	7.89491	30.6756	179
cluster_4.pdb ( medoid)	14.7968	4.59559	11.3072	68
cluster_5.pdb ( medoid)	12.9353	10.1273	34.8276	131
cluster_6.pdb ( medoid)	11.0152	6.80877	19.3854	75
cluster_7.pdb ( medoid)	8.22259	8.14829	31.6535	67
cluster_8.pdb ( medoid)	7.97323	8.9048	26.2239	71
cluster_9.pdb ( medoid)	7.07936	7.48655	21.8924	53
cluster_10.pdb ( medoid)	6.20907	5.31481	16.5905	33