Project name: 6_SRC_RUTU

Status: done

submitted: 2023-11-27 16:04:38, status changed: 2023-11-28 02:47:36

Project settings
Protein sequence(s) TFVALYDYESRTETDLSFKKGERLQIVNNTEEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAKDAWEIPRESLRLEVKLGQGCCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQP input pdb
Peptide sequence TDIFELLK
Simulation mc cycles50
Peptide secondary structure psipred CCHHHHCC
Contact information
273:A 295:A 340:A 341:A 404:A
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 35.1401 5.32155 49.445 187
cluster_2.pdb ( medoid) 30.9884 4.29192 31.6255 133
cluster_3.pdb ( medoid) 29.6655 4.0114 32.76 119
cluster_4.pdb ( medoid) 25.8033 4.108 23.5663 106
cluster_5.pdb ( medoid) 19.1771 3.02444 8.95686 58
cluster_6.pdb ( medoid) 13.0735 10.2497 48.5142 134
cluster_7.pdb ( medoid) 9.78133 8.58779 33.3034 84
cluster_8.pdb ( medoid) 8.3009 7.22813 26.1046 60
cluster_9.pdb ( medoid) 4.44961 16.8554 50.4094 75
cluster_10.pdb ( medoid) 2.00499 21.9453 49.3176 44