CABS-dock: c142f3341cc587e

Project name: c142f3341cc587e

Status: done

submitted: 2025-04-15 09:45:07, status changed: 2025-04-15 11:11:14

Project settings

Protein sequence(s)	RLKSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR input pdb
Peptide sequence	QRPYDMLC
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	55.9926	3.8398	15.0183	215
cluster_2.pdb ( medoid)	35.761	3.63524	8.1382	130
cluster_3.pdb ( medoid)	29.0283	5.33962	28.5838	155
cluster_4.pdb ( medoid)	24.7563	6.18025	24.5465	153
cluster_5.pdb ( medoid)	21.0096	3.90297	10.574	82
cluster_6.pdb ( medoid)	9.76089	5.53228	26.528	54
cluster_7.pdb ( medoid)	9.32309	8.1518	29.7684	76
cluster_8.pdb ( medoid)	3.22306	9.92845	25.7996	32
cluster_9.pdb ( medoid)	2.67142	17.2193	34.3362	46
cluster_10.pdb ( medoid)	2.64302	21.5663	43.0759	57