CABS-dock: LexA-Cs10

Project name: LexA-Cs10

Status: done

submitted: 2026-01-10 14:55:00, status changed: 2026-01-10 18:11:09

Project settings

Protein sequence(s)	EEEEGLPLVGRVAAGEPLLAQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKKQGNKVELLPENSEFKPIVVDLRQQSFTIEGLAVGVVIRNGDWL input pdb
Peptide sequence	HKIQQLNEVAIHGKAKV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCHHHHEEECCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	39.7778	5.60614	38.6715	223
cluster_2.pdb ( medoid)	25.9304	4.47352	20.7344	116
cluster_3.pdb ( medoid)	19.1275	8.57403	32.0458	164
cluster_4.pdb ( medoid)	14.9844	8.94261	40.7669	134
cluster_5.pdb ( medoid)	12.685	7.8045	21.0215	99
cluster_6.pdb ( medoid)	6.90595	7.52974	31.1223	52
cluster_7.pdb ( medoid)	4.62653	15.5624	40.2231	72
cluster_8.pdb ( medoid)	4.37603	12.34	27.2185	54
cluster_9.pdb ( medoid)	4.07964	12.0109	33.8619	49
cluster_10.pdb ( medoid)	3.96026	9.34283	26.827	37