CABS-dock: WLLAVSNVF-new

Project name: WLLAVSNVF-new

Status: done

submitted: 2025-07-02 06:05:52, status changed: 2025-07-02 19:00:52

Project settings

Protein sequence(s)	GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWMIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM input pdb
Peptide sequence	WLLAVSNVF
Simulation mc cycles	50
Peptide secondary structure psipred	CCEEEECCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	80.7128	3.79122	24.8973	306
cluster_2.pdb ( medoid)	49.3925	4.37313	26.4421	216
cluster_3.pdb ( medoid)	23.1387	4.92682	35.0212	114
cluster_4.pdb ( medoid)	15.5199	6.76551	32.0134	105
cluster_5.pdb ( medoid)	10.6253	2.25876	5.3562	24
cluster_6.pdb ( medoid)	6.79443	12.6574	36.1671	86
cluster_7.pdb ( medoid)	6.34158	11.5113	33.2106	73
cluster_8.pdb ( medoid)	3.03051	10.5593	19.958	32
cluster_9.pdb ( medoid)	1.60394	16.2101	33.4815	26
cluster_10.pdb ( medoid)	1.15147	15.6321	25.5931	18