Project name: c42dd193a5d2fd8

Status: done

submitted: 2023-11-29 03:43:31, status changed: 2023-11-29 13:18:02

Project settings
Protein sequence(s) GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWMIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDMILDTAGKEEY input pdb
Peptide sequence HAKEVVSDL
Simulation mc cycles50
Peptide secondary structure psipred CHHCHHCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 28.5206 6.38134 40.8422 182
cluster_2.pdb ( medoid) 27.5598 3.66476 22.7653 101
cluster_3.pdb ( medoid) 25.1046 3.70449 8.67487 93
cluster_4.pdb ( medoid) 23.2943 4.55047 15.8573 106
cluster_5.pdb ( medoid) 13.8951 8.13235 28.507 113
cluster_6.pdb ( medoid) 13.7139 7.80233 33.0032 107
cluster_7.pdb ( medoid) 12.5218 9.10413 26.6626 114
cluster_8.pdb ( medoid) 8.25273 4.24102 8.04851 35
cluster_9.pdb ( medoid) 7.47776 12.5706 35.9877 94
cluster_10.pdb ( medoid) 6.92042 7.94749 24.5021 55