CABS-dock: LAGLGALFSSHPTVPESTMPEQFPMLRSPL

Project name: LAGLGALFSSHPTVPESTMPEQFPMLRSPL_FAPdock

Status: done

submitted: 2025-10-07 22:05:19, status changed: 2025-10-08 03:22:40

Project settings

Protein sequence(s)	IQLPKEEIKKLEVDEITLWYKMILPPQFDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYASVYTERFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHFQNSAQIAKALVNAQVDFQAMWYSDQNHGLSGLSTNHLYTHMTHFLKQCFS input pdb
Peptide sequence	LAGLGALFSSHPTVPESTMPEQFPMLRSPL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHHHHHCCCCCCCCCCCHHCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	19.5653	5.51998	33.5668	108
cluster_2.pdb ( medoid)	16.5456	7.37355	29.5977	122
cluster_3.pdb ( medoid)	16.4789	9.70939	41.3021	160
cluster_4.pdb ( medoid)	15.5187	7.15267	22.3366	111
cluster_5.pdb ( medoid)	14.9105	8.71867	40.1577	130
cluster_6.pdb ( medoid)	13.9975	5.21523	16.0711	73
cluster_7.pdb ( medoid)	12.3104	10.154	39.4084	125
cluster_8.pdb ( medoid)	8.87649	5.85817	22.3927	52
cluster_9.pdb ( medoid)	6.02648	10.9517	36.6384	66
cluster_10.pdb ( medoid)	5.17846	10.2347	28.7089	53