CABS-dock: c569d6ef52f02c4

Project name: c569d6ef52f02c4

Status: done

submitted: 2026-03-18 10:03:15, status changed: 2026-03-18 23:37:41

Project settings

Protein sequence(s)	VKSLKKEYSNENAVVKRMQSLQLDCVAVPSSRSNSATEQPGSLHSSQGLGMGPVEESWFAPSLEHPQEENEPSLQSKLQDEANYHLYGSRMDRQTKQQPRQNVAYNREEERRRRVSHDPFAQQRPYENFQNTEGKGTAYSSAASHGNAVHQPSGLTSQPQVLYQNNGLYSSHGFGTRPLDPGTAGPRVWYRPIPSHMPSLHNIPVPETNYLGNTPTMPFSSLPPTDESIKYTIYNSTGIQIGAYNYMEIGGTSSSLLDSTNTNFKEEPAAKYQAIFDNTTSLTDKHLDPIRENLGKHWKNCARKLGFTQSQIDEIDHDYERDGLKEKVYQMLQKWVMREGIKGATVGKLAQALHQCSRIDLLSSLIYVSQN input pdb
Peptide sequence	RRRRVQLFGSNTYRR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCEECCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	61.3162	1.66351	17.0478	102
cluster_2.pdb ( medoid)	25.7451	4.46686	27.7413	115
cluster_3.pdb ( medoid)	19.8035	3.98919	28.3854	79
cluster_4.pdb ( medoid)	12.5658	10.9822	33.1303	138
cluster_5.pdb ( medoid)	9.85772	9.33278	39.6028	92
cluster_6.pdb ( medoid)	8.89762	13.7115	40.3793	122
cluster_7.pdb ( medoid)	8.136	12.414	38.7151	101
cluster_8.pdb ( medoid)	7.82954	16.0929	45.7306	126
cluster_9.pdb ( medoid)	6.43272	13.991	43.1639	90
cluster_10.pdb ( medoid)	5.20912	6.71899	25.12	35